Just Gaussian kernel, no knn

theislab / destiny

R package for single cell and other data analysis using diffusion maps

https://theislab.github.io/destiny/

GNU General Public License v3.0

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Just Gaussian kernel, no knn #45

Open balthasar0810 opened 3 years ago

balthasar0810 commented 3 years ago

Dear all,

I would like to calculate a diffusion map with Gaussian kernels of various sigma with the full probability matrix (every cell to every cell). So, NO k nearest neighbors. Is there a way to implement this with destiny? Should I just simply set k=n-1?

Thanks, Chris