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theislab
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diffxpy
Differential expression analysis for single-cell RNA-seq data.
https://diffxpy.rtfd.io
BSD 3-Clause "New" or "Revised" License
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Error message ValueError: constrained design matrix is not full rank: 7 8
#180
faniafeby
opened
4 years ago
6
problem with real data
#179
susanGhaderi
opened
4 years ago
0
ModuleNotFoundError: No module named 'diffxpy.api'
#178
susanGhaderi
closed
4 years ago
6
Error while running de.test.pairwise
#177
leonardosepulveda
opened
4 years ago
0
.plot_vs_ttest() throws dask error
#176
le-ander
opened
4 years ago
0
Allow csc_matrix input for rank and ttest
#175
ivirshup
opened
4 years ago
3
fix extraction of corf_loc_names when dmat is provided directly
#174
le-ander
closed
3 years ago
3
specifying size_factor argument breaks wald test when dmat_loc is supplied directly
#173
le-ander
opened
4 years ago
0
de.test.lrt fails with ValueError: type <class 'tuple'> not recognized
#172
letaylor
opened
4 years ago
0
Variance shrinkage/stabilization with diffxpy
#171
rforeman10
opened
4 years ago
0
TypeError: Can't instantiate abstract class Estimator with abstract methods init_par
#170
letaylor
opened
4 years ago
1
Issue With Installment
#169
ghost
opened
4 years ago
3
QUESTION: the p-value for multiple partitions of a data set
#168
jingxinfu
opened
4 years ago
2
Unusual Log2fc Values from Tests
#167
mattmajo
closed
4 years ago
3
Weird q-values when adding constraint to test.wald
#166
danielStrobl
opened
4 years ago
0
UnboundLocalError when using design matrix
#165
dawe
opened
4 years ago
4
Core dump with continuous covariates
#164
dawe
opened
4 years ago
2
Cannot unpickle de.test.wald() results
#163
le-ander
closed
4 years ago
1
Marker Gene Identification
#162
HypoChloremic
opened
4 years ago
1
Input expression matrix
#161
slieped
opened
4 years ago
1
ModuleNotFoundError: No module named 'batchglm.train.tf2'
#160
pchiang5
opened
4 years ago
0
Error running de.test.lrt: type <class 'tuple'> not recognized
#159
cchrysostomou
opened
4 years ago
2
import error with tensorflow
#158
z5ouyang
opened
4 years ago
3
mixed sparse-dense operation
#157
jayypaul
closed
5 months ago
6
Enabling p-value cutoff in volcano plots
#156
liboxun
opened
4 years ago
0
BUG: `struct.error` when `de.test.wald(...)`
#155
HypoChloremic
opened
4 years ago
3
class tuple not recognized when running de.test.pairwise
#154
fairliereese
opened
4 years ago
3
Update tutorials.rst
#153
fbnrst
opened
4 years ago
0
Lowest nonzero p-value and float64
#152
gokceneraslan
opened
4 years ago
4
Accessor method for getting all coefficients from Wald tests
#151
gokceneraslan
opened
4 years ago
3
Bulk RNAseq
#150
wangjiawen2013
closed
4 years ago
1
QUESTION: Size factors method?
#149
mtvector
closed
4 years ago
1
entries of params were nan which will throw error in lstsq
#148
QianjiangHu
opened
4 years ago
13
Dev
#147
davidsebfischer
closed
4 years ago
0
Check for single group passed for tests
#146
dburkhardt
opened
4 years ago
1
Cannot handle sparse matrices
#145
LuckyMD
closed
4 years ago
4
added function to bin ccontinuous covariates
#144
davidsebfischer
closed
4 years ago
0
Singular matrix fix
#143
davidsebfischer
closed
4 years ago
0
'Simulator' object has no attribute 'np_clip_param'
#142
wangjiawen2013
opened
4 years ago
4
Unexpected / Uninformative Error messages with simple input data and two_sample 'wald' or 'lrt'
#141
dburkhardt
opened
4 years ago
1
Fixing two_sample default noise_model
#140
dburkhardt
opened
4 years ago
3
Fixing default parameter for noise_model in two_sample test
#139
dburkhardt
closed
4 years ago
0
incremented batchglm dependency to 0.7.3
#138
davidsebfischer
closed
4 years ago
0
Dev
#137
davidsebfischer
closed
4 years ago
0
[TF2] Unit test + pkg_constant change.
#136
picciama
opened
4 years ago
0
Assertionerror in tutorial
#135
ghost
opened
4 years ago
1
Added BioGrid interface
#134
felix0097
closed
1 year ago
0
versus_rest performance
#133
ivirshup
opened
4 years ago
2
Design matrix is not full rank (on example that works in edgeR)
#132
grst
opened
4 years ago
2
ZINB noise model
#131
grst
opened
4 years ago
2
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