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theislab / graphcompass

GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
MIT License
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Depth limit #60

Closed merelkuijs closed 2 months ago

merelkuijs commented 3 months ago

If method is 'portrait', a BFS is performed to compute the 'portrait' of a graph. Previously, the depth limit of the algorithm was set to 500. While we keep 500 as the default value to speed up the computation, we allow users to adapt the depth limit if their data requires it (for example, when they work with extremely large graphs, which can result from large spatial omics FOVs).

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