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theislab
/
kBET
An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
Apache License 2.0
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Abnormal kBET Scores
#80
VishD17
opened
5 months ago
2
Which kind of normalization for 10X data is perferred for kBET?
#79
Smilenone
opened
8 months ago
3
which cell is rejected
#78
wangjiawen2013
opened
1 year ago
1
is df input kBET a data frame with cells in rows and features in columns or the opposite?
#77
joseale2310
closed
10 months ago
3
batch_sil with non-numeric batch codes
#76
jesswhitts
opened
1 year ago
1
question about input matirx size
#75
huawen-poppy
opened
1 year ago
2
Searching for code and corresponding data.
#74
sksarafad
closed
1 year ago
1
:page_facing_up: create LICENSE
#73
mbuttner
closed
2 years ago
0
Please add license to your repository
#72
HollyRuess
closed
2 years ago
3
Using kBET with AnnData object
#71
LeonHafner
closed
2 years ago
2
Add cell type label as optional argument
#70
mbuttner
opened
2 years ago
0
Improve input flexibility for kBET
#69
mbuttner
opened
2 years ago
0
Improve runtime of kBET
#68
mbuttner
opened
2 years ago
5
Scanpy Anndata object to KBET?
#67
ShaowenJ
closed
3 years ago
2
Using kBET for methylation and RNA-Seq data
#66
mxdeluca
closed
2 years ago
1
how to calculate the max rejection rate and labeled the line in line chart
#65
elva0328
closed
2 years ago
2
how to assess the batch? by rejection rate or silhouette?
#64
elva0328
closed
2 years ago
4
kBET documentation for batch argument
#63
edward130603
closed
3 years ago
2
question about mean_kBET in the README subsampling section
#62
wiredosprout
closed
3 years ago
0
Questions about cell type parameters.
#61
HelloWorldLTY
closed
3 years ago
3
Can I apply pandas pd as input or np.matrix as input for kBET? Thanks.
#60
HelloWorldLTY
closed
3 years ago
4
Error in batch_sil() and pcRegression()
#59
aditisk
opened
3 years ago
0
Working on SingleCellExperiment object.
#58
Midsummer723
closed
3 years ago
1
Error when setting nPCs to 2 in batch_sil function
#57
ilcink
closed
3 years ago
3
Dose kBET allow normalized matrix as input?
#56
yycunc
closed
1 year ago
1
kBET for scATAC-seq data
#55
cflerin
closed
3 years ago
1
Warning from 'if (class(knn) == "list")' in R 4.0.0
#54
jernest1
closed
2 years ago
5
kBET doesn't give any output?
#53
getanid123
closed
4 years ago
6
Seurat v3 and kBET
#52
rmenafra
closed
4 years ago
2
Add a release tag
#51
EugOT
closed
4 years ago
1
High rejection rates in integrated data of lung and liver than two lung tissues
#50
Quan-L
closed
3 years ago
1
data matrix for kBET evaluation
#49
phoebee-h
closed
4 years ago
1
cell x feature or feature x cell?
#48
jon-xu
closed
5 years ago
4
High rejection rates for seemingly well integrated data
#47
Sum02dean
closed
4 years ago
16
Extremely long run time
#46
csennis
closed
2 years ago
3
kBET values
#45
vkorobeynyk
closed
5 years ago
0
The input data format
#44
nottwy
closed
5 years ago
1
kBET not working (?)
#43
SNRNS
closed
5 years ago
2
weird(opposite) result
#42
james20141606
closed
5 years ago
1
Seurat CCA
#41
alextamburino
closed
5 years ago
2
Update the publication link
#40
gokceneraslan
closed
5 years ago
0
kBET within known cluster
#39
AlemuTA
closed
5 years ago
2
Alternative PCA measures implemented
#38
mbuttner
closed
6 years ago
0
Memory
#37
davetang
closed
6 years ago
6
data.R is missing
#36
wikiselev
closed
7 years ago
1
NEWS file and versioning number
#35
mbuttner
closed
7 years ago
0
Adapt to Bioconductor guidelines
#34
mbuttner
closed
7 years ago
0
add vignette
#33
mbuttner
closed
7 years ago
0
update documentation
#32
mbuttner
closed
7 years ago
0
update documentation
#31
mbuttner
closed
7 years ago
0
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