Examples to be written - Githubissues

theislab / moscot

Multi-omic single-cell optimal transport tools

https://moscot-tools.org

BSD 3-Clause "New" or "Revised" License

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Examples to be written #403

Open MUCDK opened 2 years ago

MUCDK commented 2 years ago

[x] passing custom cost matrices
[ ] LineageProblem: passing barcodes
[ ] problem_stage
[ ] plot_cell_transition

MUCDK commented 2 years ago

[ ] what to do if you don't get convergence generally
[ ] plot_convergence
[ ] advanced examples on passing (dictionary including attr, key, tag)

Marius1311 commented 2 years ago

We need separare tutorials for lineage class CR vs ICE but that's a different topic; we will probably want to have individual classes for these as well.

zoepiran commented 2 years ago

its a different discussion which in previous discussions we said we will address once we converge on the CR framework.. then we will create a dedicated problem for it

MUCDK commented 1 year ago

[ ] how to change the cost with local-pca callback, i.e. to explain what was mentioned in issue #420

MUCDK commented 1 year ago

Explain how to use xy_callback, xy_callback_kwargs, ...