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theislab
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multimil
Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
https://multimil.rtfd.io/
BSD 3-Clause "New" or "Revised" License
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Unable to run train with query data
#71
AlanTeoYueYang
opened
1 month ago
0
Bag-level predictions do not correspond to unique samples?
#70
patricks-lab
opened
3 months ago
1
Fix docs
#69
alitinet
closed
3 months ago
0
added docs to models
#68
alitinet
closed
3 months ago
0
added checkpoints
#67
alitinet
closed
1 year ago
0
Add composition-aware sampler
#66
alitinet
closed
1 year ago
1
Finetune classification
#65
alitinet
closed
1 year ago
0
Can't run .load_query_data() multiple times in a row
#64
alitinet
opened
1 year ago
1
Add fine-tuning on the classification
#63
alitinet
closed
1 year ago
0
HLCA analysis
#62
alitinet
closed
3 months ago
0
CV benchmarks
#61
alitinet
closed
3 months ago
4
Add option to pre-train VAE
#60
alitinet
closed
1 year ago
0
Integration robustness
#59
alitinet
closed
1 year ago
0
Classification/reconstruction trade-off
#58
alitinet
closed
3 months ago
0
Choose which covs to add to the MIL head
#57
alitinet
closed
3 months ago
0
Bug in query fine-tuning
#56
alitinet
closed
3 months ago
1
Refactor
#55
alitinet
closed
2 years ago
1
Support MMD integration
#54
alitinet
closed
3 months ago
0
Trimodal benchmarks
#53
alitinet
closed
3 months ago
4
Fix new integration
#52
alitinet
closed
2 years ago
1
Refactor
#51
alitinet
closed
2 years ago
1
Refactor
#50
alitinet
closed
2 years ago
1
add ordinal classification
#49
M0hammadL
closed
2 years ago
0
multitask MIL
#48
M0hammadL
closed
2 years ago
2
adding mlp attention mechanism
#47
M0hammadL
closed
2 years ago
1
the predict function breaks when new adata passed at ineference time
#46
M0hammadL
closed
3 months ago
1
add predict function
#45
M0hammadL
closed
2 years ago
6
tutorial for the or snipet for case where we only have 1 modality
#44
M0hammadL
opened
2 years ago
1
Adding cont covariate encoder as discussed
#43
M0hammadL
closed
2 years ago
2
Tensor size problem with increasing the batch effect
#42
M0hammadL
closed
2 years ago
0
Refactor
#41
alitinet
closed
2 years ago
1
PoE architectures
#40
alitinet
closed
3 years ago
1
Add PoE models
#39
alitinet
closed
3 years ago
4
Compare architectures
#38
alitinet
closed
3 years ago
5
Merge new losses and architecture
#37
alitinet
closed
3 years ago
0
Query Covid data
#36
alitinet
closed
3 years ago
1
Benchmark pairs
#35
alitinet
closed
3 years ago
1
Add paired encoders/decoders
#34
alitinet
closed
3 years ago
0
Re-run the preprocessing notebooks
#33
awakeenderman
closed
3 years ago
3
Use hyper-parameter optimization frameworks
#32
awakeenderman
closed
3 years ago
1
change file structure
#31
M0hammadL
closed
3 years ago
0
Fix progress bar
#30
M0hammadL
closed
3 years ago
0
Fix bug in Cycle Consistency loss calculation
#29
awakeenderman
closed
3 years ago
1
Benchmark on SNARE-seq dataset
#28
awakeenderman
closed
3 years ago
1
Benchmark on sci-CAR dataset
#27
awakeenderman
closed
3 years ago
2
Benchmark on 10x PBMC 10k dataset
#26
awakeenderman
closed
3 years ago
1
Add cond
#25
alitinet
closed
3 years ago
1
Add more loss functions & ability to change the decoder output
#24
alitinet
closed
3 years ago
0
Train method
#23
awakeenderman
closed
3 years ago
1
query to reference mapping feature
#22
M0hammadL
closed
3 years ago
0
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