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theislab / nicheformer

Repository for Nicheformer: a foundation model for single-cell and spatial omics
BSD 3-Clause "New" or "Revised" License
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Release the vocabulary/gene map #10

Open Egiob opened 3 months ago

Egiob commented 3 months ago

Hello, I understand that Nicheformer operates on a vocabulary of 20,310 genes. But I can't find in this repo the map that would allow to convert let's say an ensembl ID, or a gene name, to an id (i.e. a token) in your vocabulary.

Could you provide this gene map please? Or indicate how you constructed it?

Thank you so much.

yehuicheng2002 commented 2 months ago

@Egiob Hello, have you solved this problem now?