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theislab / nicheformer

Repository for Nicheformer: a foundation model for single-cell and spatial omics
BSD 3-Clause "New" or "Revised" License
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Pretrained model #4

Closed xim2016 closed 7 months ago

xim2016 commented 7 months ago

Dear Nicheformer authors,

We are exceited to see your new released nichefomrer model which can be used as the fundation or backbone of single cell deep learning training for downstearm task. Would you kindly provide your pretrained model and usage document to benefit the reader and in turn make your model more infuential.

Thank you Rena

AnnaChristina commented 7 months ago

Hi @xim2016,

thanks for your interest in using nicheformer!

We are sharing pretraining weights through mendeley data. A draft version can be accessed here: https://data.mendeley.com/preview/87gm9hrgm8?a=d95a6dde-e054-4245-a7eb-0522d6ea7dff

I will also add this information to the readme so it's easier accessible! thanks!

I am closing your comment as resolved, but feel free to open it again in case of further questions!