theislab / nicheformer

Repository for Nicheformer: a foundation model for single-cell and spatial omics
BSD 3-Clause "New" or "Revised" License
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Tutorials on using Nicheformer for downstream tasks #6

Open StanislavBratchikov opened 1 month ago

StanislavBratchikov commented 1 month ago

Hey Anna @AnnaChristina! Thank you for the great work. Could you please share any notebooks how to use learned Nicheformer weights for predicting niches in in-house spatial data (Xenium). I was only able to find tokenization tutorials in the repo. Thanks!