theislab paga issues - Githubissues

theislab / paga

Mapping out the coarse-grained connectivity structures of complex manifolds.

BSD 3-Clause "New" or "Revised" License

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issues

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Replacement of / Alternative to the ForceAtlas2 package

#32 jasonleongbio opened 2 months ago
0
Questions about adding category annotation in pl.paga_path

#31 Yansr3 opened 5 months ago
0
Legend loc for PAGA

#30 flde opened 1 year ago
0
Questions related PAGA directions analysis arrows.

#29 mayurdoke6 opened 2 years ago
0
Overlay paga-trajectory result on umap

#28 parkjooyoung99 opened 2 years ago
1
Index of data output from sc.pl.paga_path

#27 sevlandais opened 2 years ago
0
Paga results in tabular form

#26 julie-jch opened 2 years ago
0
The paga

#25 yuanzhiyuan opened 2 years ago
1
Failure to load dahlin18 data

#24 sgmccalla opened 3 years ago
0
Specify root based on specific genes

#23 GabyBG opened 3 years ago
0
Faithfulness of PAGA embedding

#22 EliseAld opened 3 years ago
0
About caculation of PAGA connectivity score

#21 hahia opened 3 years ago
0
Summer student from Pinello Lab at Harvard seeking help from Theis Lab

#20 rebecca-c21 closed 2 years ago
1
RNA velocity

#19 suminwei2772 closed 2 years ago
2
_get_connectivities_tree_v1_0

#18 masato-tsutsui opened 4 years ago
0
sc.utils.merge_groups does not exist

#17 davidfstein opened 4 years ago
0
fixed a few URLs

#16 evanbiederstedt opened 4 years ago
0
genes with different dynamics across branches + Pie charts in nodes of PAGA graphs

#15 massonix opened 4 years ago
0
About the knn graph

#13 xuebaliang opened 5 years ago
0
Write network file

#12 sgmccalla opened 5 years ago
0
RNA velocity and fig3 in the Genome Bio paper

#11 DHGK opened 5 years ago
4
ERROR: Axes instance argument was not found in a figure

#10 Pikachu233 opened 5 years ago
0
paga on integrated datasets

#9 DHGK closed 5 years ago
2
Dahlin data access

#8 sgmccalla closed 5 years ago
3
Genome Biology link is wrong?

#7 zaczap closed 5 years ago
2
No /write/pos.csv file as input for blood/nestorowa16

#6 Bio-designer opened 5 years ago
1
1M_neurons link in README.md goes to logfile_1.3M.txt

#5 fbnrst opened 5 years ago
0
Create LICENSE

#4 falexwolf closed 5 years ago
0
Running Planarian lineages: preprocessing using Scanpy Notebook

#3 ElHirad closed 4 years ago
3
zebrafish example bug

#2 AltynaiA opened 5 years ago
14
PAGA of the 1.3mln 10x dataset

#1 dkobak closed 6 years ago
31