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theislab / sc-pert

Models and datasets for perturbational single-cell omics
MIT License
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Schraivogel_2020.ipynb is not complete? #4

Open bitcometz opened 2 years ago

bitcometz commented 2 years ago

hello, I try to generate the Schraivogel_2020.h5ad according to the following notebook:

https://github.com/theislab/sc-pert/blob/main/datasets/Schraivogel_2020.ipynb

It seems it is not complete:

sc.pp.neighbors(adata)
sc.tl.umap(adata)

Could you help with this problem ? Thanks !!!

yugeji commented 2 years ago

Hi bitcometz,

Thanks for your question - yes, this notebook is not yet complete. We will get back to you ASAP.