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theislab / scCODA

A Bayesian model for compositional single-cell data analysis
BSD 3-Clause "New" or "Revised" License
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loading data with dat.from_scanpy #65

Closed HosseinMousavi closed 1 year ago

HosseinMousavi commented 1 year ago

Hi. I transformed my dataset from the seurat object to the anndata (using scanpy). I have two samples in my dataset. I am dealing with loading data from scanpy to scCODA format. what is covariate_df exactly? in the tutorial, I have not seen the real example of covariate_df. it was the simulated version.

Thanks,

HosseinMousavi commented 1 year ago

It was solved!

Thanks!

yamihn commented 5 months ago

hi, how did you solved the issue?