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theislab
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scCODA
A Bayesian model for compositional single-cell data analysis
BSD 3-Clause "New" or "Revised" License
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sample_hmc() fails without error when NAs are present
#48
RoganGrant
closed
2 years ago
1
Obtain p-values for cell type abundance effect
#47
mxposed
closed
1 year ago
1
Exit code 134
#46
RachellyN
closed
2 years ago
6
Zero Fold-change in scCODA results
#45
RachellyN
closed
2 years ago
3
Can this be used for differential expression or abundance analysis in non-single celled data (e.g., metagenomics/transcriptomics)?
#44
jolespin
closed
1 year ago
3
Include Haber data in package
#43
mbuttner
closed
2 years ago
1
Fix docs
#42
dawe
closed
2 years ago
2
Mismatched sample labels
#41
mhulke
closed
2 years ago
8
WARNING:tensorflow:@custom_gradient grad_fn has 'variables' in signature
#40
Elhl93
closed
2 years ago
5
Cannot import sccoda.util.comp_ana
#39
neurOnur
closed
2 years ago
4
MCMC reproducibility
#38
orrzor
closed
2 years ago
2
Result reproducibility issues depending on Python version
#37
Christophe29-BZH
closed
2 years ago
3
Error in version update_0.1.3: 'Inclusion probability'
#36
jdhenaos
closed
2 years ago
1
Including Bad Cells in Model
#35
kanefos
closed
3 years ago
2
how to assess sccoda results
#34
FADHLyemen
closed
2 years ago
3
Optimal tuning of parameters for estimation
#33
fbrundu
closed
2 years ago
3
add_dots parameter not respecting hue_order arg in boxplot
#32
fbrundu
closed
3 years ago
4
How to approach inference on data with multiple timepoints
#31
fbrundu
closed
3 years ago
2
Beta binomial and ANCOMBC
#30
mbuttner
closed
3 years ago
0
which condition scCODA can work with?
#29
FADHLyemen
closed
3 years ago
7
Bump tensorflow from 2.3.2 to 2.5.0
#28
dependabot[bot]
closed
3 years ago
1
how to select cell reference
#27
FADHLyemen
closed
3 years ago
5
Test All Pairwise Comparisons
#26
kanefos
closed
3 years ago
4
Solved: ImportError: cannot import name 'CloudPickler'
#25
kanefos
closed
3 years ago
0
how to make one condition as a reference
#24
FADHLyemen
closed
3 years ago
2
"division by zero" error
#23
miligeo18
closed
3 years ago
7
Add scikit-bio as dependecies
#22
b-schubert
closed
3 years ago
1
Release 0.1.2
#21
johannesostner
closed
3 years ago
1
Segmentation Fault
#20
smorabit
closed
3 years ago
1
Added 'level_order' for custom ordering in stacked_barplot
#19
redst4r
closed
3 years ago
1
Bump tensorflow from 2.3.0 to 2.4.0
#18
dependabot[bot]
closed
3 years ago
2
Release 0.1
#17
johannesostner
closed
3 years ago
1
different results in different runs
#16
bsierieb1
closed
3 years ago
8
sample_hmc error
#15
bsierieb1
closed
2 years ago
6
import from scanpy
#14
bsierieb1
closed
3 years ago
7
Warning triggered tf.function retracing
#13
b-schubert
closed
3 years ago
1
reimplemented no baselline model; added model for time-based effects
#12
johannesostner
closed
3 years ago
0
Merge dev into master for ML Hackathon
#11
johannesostner
closed
3 years ago
1
added functions for data visualization, extended model comparison
#10
johannesostner
closed
3 years ago
1
How to save `sim_results` object?
#9
mbuttner
closed
3 years ago
3
Error in samle_hmc()
#8
le-ander
closed
4 years ago
3
boostrapping on posterior samples for inclusion prob variance
#7
b-schubert
closed
3 years ago
0
API design comment
#6
giovp
closed
4 years ago
2
Error + question on model usage
#5
giovp
closed
4 years ago
2
logfoldchange always -0.430725 for non significant classes
#4
le-ander
closed
4 years ago
2
python convention lower case
#3
mbuttner
closed
4 years ago
0
Error: Object was never used
#2
b-schubert
closed
4 years ago
1
Progessbar possible?
#1
b-schubert
closed
4 years ago
1
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