felix0097
commented
2 weeks ago Hi shobhit,
yes the module is not installed in the container. But you should be able to install it via pip install -e . --no-deps (You don't need to install any dependencies, they're already installed in the container image).
Let me know if that works for you, Felix
shobhitagrawal1
Dear Felix, Thank you for the great tool, it can really help in my current endeavour of defining de-novo cell types for atlas level data, which has several covariates. I am trying to install and run the program, however, running into some problems. My current strategy was to download the smsh file provided by you and then convert it to a singularity container and then run the program. I assumed, perhaps incorrectly that the cellnet module will be available in the container, however, I could not import it. Trying to install from pip after cloning also failed, owing to container permissions. I can of course try other ways including creating a sandbox etc. I would be really happy if you could just give me some tips regarding how to get the program up and running starting from downloading the smsh file, converting to a singularity container. I am sorry to bother you and apologize for a noob question. Thanking you shobhit