theislab / scarches

Reference mapping for single-cell genomics
https://docs.scarches.org/en/latest/
BSD 3-Clause "New" or "Revised" License
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Install issue - no .yml in repo #194

Closed james-cranley closed 1 year ago

james-cranley commented 1 year ago

Hi, just to say I can install scArches fine by pip, but following the instructions below (from https://docs.scarches.org/en/latest/installation.html) doesn't work because there is no scarches_linux.yml in the github repo

git clone https://github.com/theislab/scarches
cd scarches
conda env create -f envs/scarches_linux.yml
conda activate scarches
Koncopd commented 1 year ago

Sorry, it is scarches_linux.yaml, not scarches_linux.yml. I will edit.

james-cranley commented 1 year ago

great, thanks!