Perform scArches in R using Seurat

theislab / scarches

Reference mapping for single-cell genomics

https://docs.scarches.org/en/latest/

BSD 3-Clause "New" or "Revised" License

323 stars 50 forks source link

Perform scArches in R using Seurat #207

Open ConDem94 opened 11 months ago

ConDem94 commented 11 months ago

Hi,

I have a reference integrated dataset using scvi (reticulate) with annotated cell types. I want to combine it with a query dataset. Is it possible to do this using scArches in R with reticulate?

Best wishes, Constantinos