Scpoli get latent - Githubissues

theislab / scarches

Reference mapping for single-cell genomics

https://docs.scarches.org/en/latest/

BSD 3-Clause "New" or "Revised" License

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Closed chelseabright96 closed 6 months ago

chelseabright96 commented 7 months ago

Batch the adata.X before getting the latent representation. Add if statement to return the mean param of the encoder output

Koncopd commented 6 months ago

Looks fine to me, thanks.