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theislab / scgen

Single cell perturbation prediction
https://scgen.readthedocs.io
GNU General Public License v3.0
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Keras 2.4.3 incompatibility with TensorFlow 2.1? #25

Closed Lin-K76 closed 4 years ago

Lin-K76 commented 4 years ago

Hi Theis Lab,

After creating a conda environment and installing only the scGen package, I tried to run "import scgen" as a test. However, I receive an error that seems like a package incompatibility: Keras requires TensorFlow 2.2 or higher. After installing TensorFlow 2.2, multiple other issues kept popping up so I reinstalled scgen. I then tried to downgrade only Keras to 2.3.0, which seemed to work and allowed me to run "import scgen" without compile errors. Will this still allow full scGen functionality? I am using Windows 10. Thank you!

M0hammadL commented 4 years ago

Hi @Lin-K76 thanks for pointing this out, yes it should be fine, I have also updated req to install keras 2.3