Closed kleurless closed 3 years ago
Hi
We have released a new PyTorch version of the code. Please use this version.
Best Mo
same problem. I have everything updated. I try to concatenate multiple adatas and then train model further going to batch correction. gdown==4.4.0 matplotlib==3.5.1 scgen==2.1.0 numpy==1.21.6 scanpy==1.9.1
Hi!
I think that I have got a similar issue to #1 (which should be fixed), I have a merged object with 3 batches and 35 cell types. Training of the network works like a charm, but the batch_removal step throws the following error:
Any help would be much appreciated!
scanpy==1.4.6 anndata==0.7.1 umap==0.3.10 numpy==1.18.1 scipy==1.4.1 pandas==1.0.1 scikit-learn==0.22.1 statsmodels==0.11.1 python-igraph==0.8.0 louvain==0.6.1 scgen==1.1.4