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theislab / scgen

Single cell perturbation prediction
https://scgen.readthedocs.io
GNU General Public License v3.0
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Tutorial Data gets not found? #47

Closed ShaowenJ closed 3 years ago

ShaowenJ commented 3 years ago

Hi,

can you provide a new link or path for the training datasets in this tutorial https://scgen.readthedocs.io/en/latest/tutorials/scgen_perturbation_prediction.html and this tutorial? https://nbviewer.jupyter.org/github/M0hammadL/scGen_reproducibility/blob/master/Jupyter%20Notebooks/Fig2.ipynb

I got 404 for the train = sc.read("./tests/data/train_kang.h5ad", backup_url="https://goo.gl/33HtVh") And couldn't find the corresponding dataset named as "train_pbmc.h5ad"

Thanks!

jlduan commented 3 years ago

Hi,

Thanks for developing this package. I have troubles downloading and repeating the tutorial too.

Best,

M0hammadL commented 3 years ago

@Cottoneyejoe95 would you please update the link for the data?

Cottoneyejoe95 commented 3 years ago

Hi @Lesdormis and @jlduan , thanks for reporting this error. I updated the url for the file, so it should work now.

bitcometz commented 3 years ago

hi, I also cannot find the file train_pbmc.h5ad . Could you help with this problem ?

Thanks !!!

M0hammadL commented 3 years ago

@Cottoneyejoe95 cold you please update the link