In the latest version it of scgen (2.1.0) it shows the following error when trying to import the module.
DeprecationWarning Traceback (most recent call last)
Cell In [1], line 2
1 # scgen
----> 2 import scgen
File /opt/conda/lib/python3.9/site-packages/scgen/init.py:3
1 """ScGen - Predicting single cell perturbations"""
----> 3 from ._scgenvae import SCGENVAE
4 from ._scgen import SCGEN
6 import logging
File /opt/conda/lib/python3.9/site-packages/scgen/_scgenvae.py:4
2 import torch
3 from scvi import REGISTRY_KEYS
----> 4 from scvi._compat import Literal
5 from scvi.module.base import BaseModuleClass, LossRecorder, auto_move_data
6 from scvi.nn import Encoder
File /opt/conda/lib/python3.9/site-packages/scvi/_compat.py:1
----> 1 class Literal:
2 """Shim Literal."""
4 raise DeprecationWarning("This class is deprecated, please import from typing")
File /opt/conda/lib/python3.9/site-packages/scvi/_compat.py:4, in Literal()
1 class Literal:
2 """Shim Literal."""
----> 4 raise DeprecationWarning("This class is deprecated, please import from typing")
DeprecationWarning: This class is deprecated, please import from typing
Testing if different versions do not have this error.
chAwater
commented
9 months ago
In the latest version it of scgen (2.1.0) it shows the following error when trying to import the module.
DeprecationWarning Traceback (most recent call last) Cell In [1], line 2 1 # scgen ----> 2 import scgen
File /opt/conda/lib/python3.9/site-packages/scgen/init.py:3 1 """ScGen - Predicting single cell perturbations""" ----> 3 from ._scgenvae import SCGENVAE 4 from ._scgen import SCGEN 6 import logging
File /opt/conda/lib/python3.9/site-packages/scgen/_scgenvae.py:4 2 import torch 3 from scvi import REGISTRY_KEYS ----> 4 from scvi._compat import Literal 5 from scvi.module.base import BaseModuleClass, LossRecorder, auto_move_data 6 from scvi.nn import Encoder
File /opt/conda/lib/python3.9/site-packages/scvi/_compat.py:1 ----> 1 class Literal: 2 """Shim Literal.""" 4 raise DeprecationWarning("This class is deprecated, please import from typing")
File /opt/conda/lib/python3.9/site-packages/scvi/_compat.py:4, in Literal() 1 class Literal: 2 """Shim Literal.""" ----> 4 raise DeprecationWarning("This class is deprecated, please import from typing")
DeprecationWarning: This class is deprecated, please import from typing
Testing if different versions do not have this error.