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theislab / scgen

Single cell perturbation prediction
https://scgen.readthedocs.io
GNU General Public License v3.0
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missing dependencies #9

Closed mumichae closed 4 years ago

mumichae commented 5 years ago

keras seems to be missing when installing scgen for the first time

mumichae commented 5 years ago

same with adjustText

M0hammadL commented 5 years ago

@mumichae Hi, those are still left from old times, we will remove adjustText and add keras.

M0hammadL commented 5 years ago

I checked if you install it via pip all the dependencies like keras and ajdust-text are also installed.

https://github.com/theislab/scgen/blob/e2aaf55dd48adb68a63c812c7576f901ae69ba28/pyproject.toml#L19-L24

mumichae commented 5 years ago

oh right, I forgot to mention that I was installing it directly from the repo using flit install because I had made some changes to the code