Hello,
Thank you for your great work on this package. I am interested in computing the log-likelihood for unseen observation given a trained scGen model. However, I found that using get_marginal_ll throws an error "marginal_ll is not implemented for current model. Please raise an issue on github if you need it.", and appears to do so as well for the perturbation tutorial:
Which gives this error:
NotImplementedError: marginal_ll is not implemented for current model. Please raise an issue on github if you need it.
I realize this may be an issue with scvi-tools rather than scGen, but in any case, it would be very helpful to have easy access to log-likelihoods for scGen models, both to interpret models and for methods development on top of scGen.
Hello, Thank you for your great work on this package. I am interested in computing the log-likelihood for unseen observation given a trained scGen model. However, I found that using get_marginal_ll throws an error "marginal_ll is not implemented for current model. Please raise an issue on github if you need it.", and appears to do so as well for the perturbation tutorial:
Which gives this error: NotImplementedError: marginal_ll is not implemented for current model. Please raise an issue on github if you need it.
I realize this may be an issue with scvi-tools rather than scGen, but in any case, it would be very helpful to have easy access to log-likelihoods for scGen models, both to interpret models and for methods development on top of scGen.
Thanks!