search

theislab / scgen

Single cell perturbation prediction
https://scgen.readthedocs.io
GNU General Public License v3.0
260 stars 52 forks source link

dependencies update required #97

Open janursa opened 1 month ago

janursa commented 1 month ago

updated: if installed using git, it imports successfully. seems like the new updates are not published to pip

On python=3.10, installed pip install scgen, when i import scgen, i get


Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/beegfs/desy/user/nourisaj/miniforge3/lib/python3.10/site-packages/scgen/__init__.py", line 3, in <module>
    from ._scgenvae import SCGENVAE
  File "/beegfs/desy/user/nourisaj/miniforge3/lib/python3.10/site-packages/scgen/_scgenvae.py", line 4, in <module>
    from scvi._compat import Literal
ModuleNotFoundError: No module named 'scvi._compat'