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theislab / scib-pipeline

Snakemake pipeline that works with the scIB package to benchmark data integration methods.
MIT License
64 stars 28 forks source link

mouse brain dataset is not available? #43

Open yuxiaokang-source opened 2 years ago

yuxiaokang-source commented 2 years ago

It's a wonderful work, I have found all datasets but mouse brain dataset on https://figshare.com/articles/dataset/Benchmarking_atlas-level_data_integration_in_single-cell_genomics_-_integration_task_datasets_Immune_and_pancreas_/12420968? Could you provide the mouse brain dataset? Thank you very much

LuckyMD commented 2 years ago

Hi @yuxiaokang-source,

That's a very good point. I have tried to upload the mouse brain dataset several times, but it's so large that the upload is often timed out and then fails. I will try again in the next days.

mumichae commented 1 year ago

Is this resolved?

LuckyMD commented 1 year ago

no, :/... do you want to try to upload to figshare @mumichae ?

yuxiaokang-source commented 1 year ago

If you fail to upload to figshare, would you mind to provide another download link for users to download? Thank you very much

mbuttner commented 1 year ago

Can we try zenodo? That platform might have a higher file size limit than figshare.