Open TheVille415 opened 11 months ago
I have run into the same problem.
Additionally, while running the Snakemake command, I encountered the following error:
As in highlighted in the image, it was a problem with ‘lru_cache’ . I have not been able to resolve that, and receive the output for the Snakemake command.
Hi!
Thank you so much for publishing the pipeline but I am having some errors getting the pipeline working properly.
Starting with the igraph version error, adding in louvain and cairocffi as dependencies, the (cannot import name 'Protocol' from 'typing') error, and working on finding the right version of optax. scvi, and scgen.
Here are some of the errors I have gotten:
There have been many roadblocks in getting the pipeline working with the information we have posted. Is there a way to get an updated version of the pipeline, or an updated pipeline-R4.0.yml file?
I really appreciate any help you can provide.