Closed mbuttner closed 5 years ago
I think it would be better to include louvain clustering in runScGen. Because most of input AnnData objects don't contain 'louvain'
I just added the louvain clustering in runScGen. It needs to be verified
Why would you add louvain clustering to scGen? I'm not aware that scGen requires clusters as input. I feel like it shouldn't...
@M0hammadL ?
scGen 2.0 will be used, instead of scGen 1.0. This does not require cell type info.
Hi,
I executed the scgen data integration using the following command:
and obtained this error message:
The thing is that my data set does not contain the 'cell_type' field, so can you add in the
runScGen
function something like? Thanks!