scib doesn't install with python 3.8 anymore

theislab / scib

Benchmarking analysis of data integration tools

MIT License

294 stars 63 forks source link

scib doesn't install with python 3.8 anymore #222

Closed danielStrobl closed 3 years ago

danielStrobl commented 3 years ago

Due to the github actions PR and the changed dependenices, scIB does not install with Python 3.8 anymore. scGen requires tensorflow 1.15 which is not available for python 3.8.

Do we need to have the integration tools as required dependencies? Or would it be possible to have those as optional dependencies?

LuckyMD commented 3 years ago

Please move to optional. We should definitely not have these as required. This might entail moving import statements into functions in integration.py though.