theislab / scib

Benchmarking analysis of data integration tools
MIT License
294 stars 63 forks source link

Update `anndata.concatentation` use in scIB #225

Closed LuckyMD closed 3 years ago

LuckyMD commented 3 years ago

AnnData.concatenation will be replaced with .concat soon, which has slightly different input parameters (https://github.com/theislab/anndata/issues/526). This is currently used in runScanorama in integration.py.