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theislab / scib

Benchmarking analysis of data integration tools
MIT License
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Why I cannot find runSeurat here? #248

Closed HelloWorldLTY closed 3 years ago

HelloWorldLTY commented 3 years ago

It seems that runSeurat has been moved out from scIB, so I wonder if I still can use it in python or not? Otherwise maybe in highly variance gene selection I can run seurat v3. I am not very sure.

LuckyMD commented 3 years ago

Hi @ChineseBest,

We ran Seurat from R, but used HVG selection in python to select a consistent set of genes. The runSeurat method is now in scib-pipeline here