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theislab / scib

Benchmarking analysis of data integration tools
MIT License
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Questions related to scIB metrics #259

Closed HelloWorldLTY closed 3 years ago

HelloWorldLTY commented 3 years ago

/usr/local/lib/python3.7/dist-packages/numba/np/ufunc/parallel.py:363: NumbaWarning: The TBB threading layer requires TBB version 2019.5 or later i.e., TBB_INTERFACE_VERSION >= 11005. Found TBB_INTERFACE_VERSION = 9107. The TBB threading layer is disabled. warnings.warn(problem)

ImportError Traceback (most recent call last)

in () 2 import loompy 3 import copy ----> 4 import scIB 1 frames /usr/local/lib/python3.7/dist-packages/scIB/clustering.py in () 5 import scanpy as sc 6 from scIB import utils ----> 7 from scIB import metrics 8 9 ImportError: cannot import name 'metrics' from 'scIB' (/usr/local/lib/python3.7/dist-packages/scIB/__init__.py) I meet this error in colab when I intend to use scIB. I use this code to install it: pip install git+https://github.com/theislab/scib.git Anything wrong? Thanks.
LuckyMD commented 3 years ago

@mumichae just reformated the metrics file today. I guess this was from before that... Does from scIB import me work? Otherwise you can just access metrics via scIB.me or scIB.metrics.

mumichae commented 3 years ago

Fixed in #258