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theislab / scib

Benchmarking analysis of data integration tools
MIT License
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isolated label scores do not return expected results #367

Closed danielStrobl closed 1 year ago

danielStrobl commented 1 year ago

https://github.com/theislab/scib/blob/82444efd3e4378c487001e701a4a1209ef954aaa/scib/metrics/isolated_labels.py#L229-L230

This function gives the mean over all cells and not only the mean for the cells that are part of the isolated label. This leads to much lower scores with the baselines as observed here: https://github.com/openproblems-bio/openproblems/issues/685

mumichae commented 1 year ago

should be solved by #370