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theislab / scvelo

RNA Velocity generalized through dynamical modeling
https://scvelo.org
BSD 3-Clause "New" or "Revised" License
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Sharing Software Versions for Successful scvelo Execution #1144

Closed wlqtriumph closed 9 months ago

wlqtriumph commented 9 months ago

Hello everyone,

I wanted to share the versions of the software I used for a successful run of scvelo. I successfully completed the run on November 25, 2023.

scvelo==0.2.5 scanpy==1.9.6 anndata==0.9.2 loompy==3.0.7 numpy==1.23.5 scipy==1.10.1 matplotlib==3.7.4 sklearn==1.2.2 pandas==1.1.5

I must admit, these codes can be a bit of a head-scratcher for a medical student like myself. 😅 Though I might not fully grasp it, the good news is it ran without a hitch! If any fellow medical students have questions or want to share their experiences with similar software versions, let's navigate this complex world together. ![image](https://github.com/theislab/scvelo/assets/95834424/d4f797b8-7fee-48c1-8109-3343a9929c00

Snipaste_2023-11-25_20-28-17
yuanwsy commented 9 months ago

what 's the versions of cellrank you use?it seems that pandas==1.1.5 is incompatible to cellrank==2.0.2

wlqtriumph commented 9 months ago

what 's the versions of cellrank you use?it seems that pandas==1.1.5 is incompatible to cellrank==2.0.2

I did not use CellRank. Here is the code with all the libraries I used: import pandas as pd, import scvelo as scv, import numpy as np, import anndata.