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theislab / scvelo

RNA Velocity generalized through dynamical modeling
https://scvelo.org
BSD 3-Clause "New" or "Revised" License
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scv.pl.proportions() -- "axis 1 is out of bounds for array of dimension 1" #1237

Open Alvis-Jiang opened 5 months ago

Alvis-Jiang commented 5 months ago

Hi,

I am using the suggested tutorial of kallisto to process the input data of scvelo, which contained splice/unspliced read and is as shown below:

1

However, when I run scv.pl.proportions(adata) it give the error of AxisError: axis 1 is out of bounds for array of dimension 1, whose details are below: 2

I believe I already have two layers of spliced and unspliced data, could you kindly give me some guidance on solving this issue? Thanks a lot!

Boyu