Fix broken download URLs

[le-ander]

Current list:

Traceback (most recent call last):
  File "/home/zeth/PycharmProjects/sfaira/scripts/check_urls.py", line 29, in <module>
    raise AssertionError(f"{len(failed_urls)} URLs failed.")
AssertionError: 15 URLs failed.
[['https://advances.sciencemag.org/highwire/filestream/234522/field_highwire_adjunct_files/2/aba1972_Table_S2.csv', <HTTPError 403: 'Forbidden'>],
['https://cellgeni.cog.sanger.ac.uk/BenKidney_v2.1/Mature_Full_v2.1.h5ad', <HTTPError 404: 'Not Found'>], 
['https://cellgeni.cog.sanger.ac.uk/BenKidney_v2.1/Fetal_full.h5ad', <HTTPError 404: 'Not Found'>],
['https://data.humancellatlas.org/project-assets/project-matrices/cc95ff89-2e68-4a08-a234-480eca21ce79.homo_sapiens.loom', <HTTPError 404: 'Not Found'>],
 ['https://www.science.org/doi/suppl/10.1126/sciimmunol.abd1554/suppl_file/table_s1.xlsx', <HTTPError 403: 'Forbidden'>],
 ['http://cf.10xgenomics.com/samples/cell-exp/3.0.0/pbmc_10k_v3/pbmc_10k_v3_filtered_feature_bc_matrix.h5', <HTTPError 403: 'Forbidden'>],
 ['https://czb-tabula-muris-senis.s3-us-west-2.amazonaws.com/Data-objects/tabula-muris-senis-facs-processed-official-annotations-SCAT.h5ad', URLError(TimeoutError(110, 'Connection timed out'))],
 ['https://czb-tabula-muris-senis.s3-us-west-2.amazonaws.com/Data-objects/tabula-muris-senis-droplet-processed-official-annotations-Marrow.h5ad', URLError(TimeoutError(110, 'Connection timed out'))],
 ['https://czb-tabula-muris-senis.s3-us-west-2.amazonaws.com/Data-objects/tabula-muris-senis-droplet-processed-official-annotations-Tongue.h5ad', URLError(TimeoutError(110, 'Connection timed out'))],
 ['https://beta.fastgenomics.org/p/schulte-schrepping_covid19', <HTTPError 404: 'Not Found'>], ['https://beta.fastgenomics.org/p/schulte-schrepping_covid19', <HTTPError 404: 'Not Found'>],
 ['https://beta.fastgenomics.org/p/schulte-schrepping_covid19', <HTTPError 404: 'Not Found'>], ['https://beta.fastgenomics.org/p/schulte-schrepping_covid19', <HTTPError 404: 'Not Found'>],
 ['https://beta.fastgenomics.org/p/schulte-schrepping_covid19', <HTTPError 404: 'Not Found'>], ['https://beta.fastgenomics.org/p/schulte-schrepping_covid19', <HTTPError 404: 'Not Found'>]]

[davidsebfischer]

• [ ] d10_1126_science_aat5031: 'https://cellgeni.cog.sanger.ac.uk/BenKidney_v2.1/Mature_Full_v2.1.h5ad', 'https://cellgeni.cog.sanger.ac.uk/BenKidney_v2.1/Fetal_full.h5ad' I noticed before that datasets from other studies were taken down from this server, they were previously moved somewhere else, we should consider checking the locationfor all studies on this server for alternate data locations on GEO or so again. This one seems to have been moved here: https://www.kidneycellatlas.org/
• [ ] dno_doi_regev: 'https://data.humancellatlas.org/project-assets/project-matrices/cc95ff89-2e68-4a08-a234-480eca21ce79.homo_sapiens.loom', update comment in loader https://github.com/theislab/sfaira/blob/ac42cb7603d25953a86d01781365cadd329532e1/sfaira/data/dataloaders/loaders/dno_doi_regev/human_x_2018_10xsequencing_regev_001.py#L11
• [ ] d10_1101_661728/mouse_x_2019_x_pisco_x.py 'https://czb-tabula-muris-senis.s3-us-west-2.amazonaws.com/Data-objects/tabula-muris-senis-facs-processed-official-annotations-SCAT.h5ad', 'https://czb-tabula-muris-senis.s3-us-west-2.amazonaws.com/Data-objects/tabula-muris-senis-droplet-processed-official-annotations-Marrow.h5ad', 'https://czb-tabula-muris-senis.s3-us-west-2.amazonaws.com/Data-objects/tabula-muris-senis-droplet-processed-official-annotations-Tongue.h5ad' probably here https://registry.opendata.aws/tabula-muris-senis/

Simply login access in these cases?

• [ ] 'https://beta.fastgenomics.org/p/schulte-schrepping_covid19', 'https://beta.fastgenomics.org/p/schulte-schrepping_covid19', 'https://beta.fastgenomics.org/p/schulte-schrepping_covid19', 'https://beta.fastgenomics.org/p/schulte-schrepping_covid19'
• [ ] 'https://www.science.org/doi/suppl/10.1126/sciimmunol.abd1554/suppl_file/table_s1.xlsx'
• [ ] 'http://cf.10xgenomics.com/samples/cell-exp/3.0.0/pbmc_10k_v3/pbmc_10k_v3_filtered_feature_bc_matrix.h5'