theislab / sfaira

data and model repository for single-cell data
https://sfaira.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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Data/d10 1101 2022 10 24 513487 #711

Closed katelynxli closed 1 year ago

katelynxli commented 1 year ago

Braun dataloader running into error:

transformed feature space on homosapiens_None_2022_None_braunemelie_001_d10_1101_2022_10_24_513487: 
log10 total counts 10.11 to 0.0, non-zero features 48763 to 0
Mapping your feature space to a reference annotation resulted in a heavy loss of counts in dataset 
homosapiens_None_2022_None_braunemelie_001_d10_1101_2022_10_24_513487.
From 13029794816.0 total counts before streamlining, 0.0 are left after.
Consider revising feature meta data.
le-ander commented 1 year ago

Thanks a lot, Katelyn!