/lustre/groups/ml01/code/irena.sliskovic/sfaira/sfaira/data/dataloaders/loaders/d10_1038_s41586_020_1962_0/homosapiens_forebrain_2020_10x3v2_bhaduri_001.py:52: FutureWarning: X.dtype being converted to np.float32 from float64. In the next version of anndata (0.9) conversion will not be automatic. Pass dtype explicitly to avoid this warning. Pass AnnData(X, dtype=X.dtype, ...) to get the future behavour.
adata = ad.AnnData(df.T)
/lustre/groups/ml01/code/irena.sliskovic/sfaira/sfaira/versions/genomes/genomes.py:198: DtypeWarning: Columns (0) have mixed types.Specify dtype option on import or set low_memory=False.
self.load_genome()
transformed feature space on homosapiens_forebrain_2020_10x3v2_bhaduriaparna_001_d10_1038_s41586_020_1962_0:
log10 total counts 10.4 to 10.37, non-zero features 16774 to 14265
2023-02-28 14:29:20.890929: W tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libcudart.so.11.0'; dlerror: libcudart.so.11.0: cannot open shared object file: No such file or directory; LD_LIBRARY_PATH: /opt/R/lib/R/lib
2023-02-28 14:29:20.891017: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.
Completed testing of data loader, the data loader is now ready for use.
Sfaira butler: "You data loader is finished!"
"Proceed to phase 4 (publish) or use data loader."
"Copy the following lines as a post into the pull request:"
/lustre/groups/ml01/code/irena.sliskovic/sfaira/sfaira/data/dataloaders/loaders/d10_1038_s41586_020_1962_0/homosapiens_forebrain_2020_10x3v2_bhaduri_001.py:52: FutureWarning: X.dtype being converted to np.float32 from float64. In the next version of anndata (0.9) conversion will not be automatic. Pass dtype explicitly to avoid this warning. Pass
AnnData(X, dtype=X.dtype, ...)to get the future behavour. adata = ad.AnnData(df.T) /lustre/groups/ml01/code/irena.sliskovic/sfaira/sfaira/versions/genomes/genomes.py:198: DtypeWarning: Columns (0) have mixed types.Specify dtype option on import or set low_memory=False. self.load_genome() transformed feature space on homosapiens_forebrain_2020_10x3v2_bhaduriaparna_001_d10_1038_s41586_020_1962_0: log10 total counts 10.4 to 10.37, non-zero features 16774 to 14265 2023-02-28 14:29:20.890929: W tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libcudart.so.11.0'; dlerror: libcudart.so.11.0: cannot open shared object file: No such file or directory; LD_LIBRARY_PATH: /opt/R/lib/R/lib 2023-02-28 14:29:20.891017: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine. Completed testing of data loader, the data loader is now ready for use. Sfaira butler: "You data loader is finished!" "Proceed to phase 4 (publish) or use data loader." "Copy the following lines as a post into the pull request:"Data loader test passed:
homosapiens_forebrain_2020_10x3v2_bhaduriaparna_001_d10_1038_s41586_020_1962_0