theislab / single-cell-transformer-papers

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Add ScRAT #5

Closed VladimirShitov closed 2 months ago

VladimirShitov commented 3 months ago
VladimirShitov commented 3 months ago

Thank you for your comments; I addressed them :) I'm not sure how to classify input embeddings, though. Would you consider cell embeddings followed by attention layer a "value projection"?

Regarding COMBAT, there is a link to CellXGene.

VladimirShitov commented 2 months ago

@szalata , could you take a look at the merge conflict? Quite a few lines changed with a recent commit in main. You know the file better, so perhaps it's faster for you to fix it :)

szalata commented 2 months ago

great! ofc!