Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Hello dear Authors,
thank you for that great notebook and corresponding paper!
I have an question about the counts of duodenum they turned out to be about half the expected count (see screenshot). The only thing I changed was to add:
_adata.var_names_makeunique()
since I had issues otherwise when loading data. (There is an issue like that on git also).
How come that is counts half of the data? I did not modify the dataset.
Thank you!
!
THE ISSUE WAS RESOLVED:
I had to just rerun the whole thing again, so that the list with names and sample is reinitialized
LuckyMD
commented
2 years ago
RESOLVED
Hello dear Authors, thank you for that great notebook and corresponding paper! I have an question about the counts of duodenum they turned out to be about half the expected count (see screenshot). The only thing I changed was to add: _adata.var_names_makeunique() since I had issues otherwise when loading data. (There is an issue like that on git also). How come that is counts half of the data? I did not modify the dataset. Thank you!
!
THE ISSUE WAS RESOLVED: I had to just rerun the whole thing again, so that the list with names and sample is reinitialized