theislab / spatialdata-db

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Visium DBs missing all visium-reader inputs #12

Open Farbodch opened 5 months ago

Farbodch commented 5 months ago

The following dbs are missing all the inputs the visium-reader requires (not provided by 10x):

Subpipeline for the above dbs: spaceranger targeted-compare as opposed to subpipeline spaceranger count for the rest of the dbs of the same organ (Ovary/Cerebellum) in the respective Pipeline version (v1.2.0).