Collect per cell scores - Githubissues

theislab / txsim

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Collect per cell scores #102

Open LouisK92 opened 5 months ago

LouisK92 commented 5 months ago

other measures

[x] spot uniformity
[ ] spot uniformity per gene (averaged over genes)
[x] cell density in neighborhood
[x] cell type heterogeneity in neighbourhood
[x] spot density within cell
[x] spot density within an area of a given cell

similarty metrics

[x] knn mixing

self-consistency metrics