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theislab / zellkonverter

Conversion between scRNA-seq objects
https://theislab.github.io/zellkonverter/
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Values in SCE metadata are lost #115

Closed lucas02061 closed 5 months ago

lucas02061 commented 5 months ago

I have tried to use the following function to convert data from SCE to H5AD format. However, the metadata after using zellkonverter is lost. Example, if I try to write a dataset and then read it again, the metadata is empty when I read it. Is there a way to solve this? Potentially another name/location to store this information? Thanks. zellkonverter::writeH5AD(sce = SCE, file = file_path)

Cheers, Lucas

lazappi commented 5 months ago

Hi @lucas02061

To answer this, I would need to know more about what information is lost and the output you get when using writeH5AD(). A small reproducible example would also be very helpful.

lucas02061 commented 5 months ago

I found out this was a mistake with SCE not zellkonverter. Sorry for the inconvenience.