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theislab / zellkonverter

Conversion between scRNA-seq objects
https://theislab.github.io/zellkonverter/
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Unable to configure environment #118

Open liuweihahaha opened 2 months ago

liuweihahaha commented 2 months ago

Hi, When I downloaded the zellkonverter package, and I already downloaded anaconda, I kept getting errors when I called readH5AD, my network was fine.The following is an error

zellkonverter::readH5AD("A5_345_S1Aligned.sortedByCoord.out.h5ad") trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-py39_4.12.0-Linux-x86_64.sh' Error in download.file(url, fname, mode = "wb") : cannot open URL 'https://repo.anaconda.com/miniconda/Miniconda3-py39_4.12.0-Linux-x86_64.sh'

lazappi commented 2 months ago

Hi @liuweihahaha

Installing the Python environments is handled by {basilisk} so this question might be more appropriate there.

I know you said your network was fine but it does seem like R can't connect for some reason. You could test this just with download.file('https://repo.anaconda.com/miniconda/Miniconda3-py39_4.12.0-Linux-x86_64.sh'). If that doesn't work then it is something to do with your connection, not anything in {zellkonverter}/{basilisk}.