Skip matrices that cannot be converted, replacing them with placeholder sparse matrices.
Emit a warning when a matrix is skipped in this manner, unless skip_assays=NA.
If skip_assays=NA, report the skipped assays in the internal metadata for remedial action.
This closes #12 when there is a mixture of sparse and HDF5-backed matrices in the AnnData object. The former are loaded and converted into R as usual while the latter are used to create HDF5Arrays.
skip_assays=NA
.skip_assays=NA
, report the skipped assays in the internal metadata for remedial action.This closes #12 when there is a mixture of sparse and HDF5-backed matrices in the AnnData object. The former are loaded and converted into R as usual while the latter are used to create
HDF5Array
s.