theislab / zellkonverter

Conversion between scRNA-seq objects
https://theislab.github.io/zellkonverter/
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Add arguments to select what is converted #47

Closed lazappi closed 2 years ago

lazappi commented 3 years ago

From my own work sometimes it would be nice to be able to control what is converted, mostly to avoid duplicated things that aren't needed or to avoid converting something that fails (although checks should hopefully avoid that).

Arguments should let users select for each slot if all of it is converted, none of it or some selection. For example for assays in SCE2AnnData():

lazappi commented 3 years ago

@LTLA Any objections to adding this functionality (or reasons it's a bad idea)?

LTLA commented 3 years ago

Sounds reasonable to me.

lazappi commented 2 years ago

Done in devel