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theislab / zellkonverter

Conversion between scRNA-seq objects
https://theislab.github.io/zellkonverter/
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Fleshed out writing tests #5

Closed LTLA closed 4 years ago

LTLA commented 4 years ago

Turns out that writeH5AD + readH5AD coerces character vectors to factors. I wonder if there's a way to turn this off, it's another roadblock to a perfect round-trip.

Being able to remember the original name of the X matrix would also be kind of nice, but I guess there's not much choice there.

lazappi commented 4 years ago

Thanks! I'll create issues for the things you mentioned and have a play around but I think any solutions may be a bit hacky.