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theislab / zellkonverter

Conversion between scRNA-seq objects
https://theislab.github.io/zellkonverter/
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Remember the original name of the X matrix #7

Closed lazappi closed 3 years ago

lazappi commented 4 years ago

This is currently lost if you convert form SingleCellExperiment to AnnData and back.

One possible solution is to store the name of the X matrix in the .uns slot of the AnnData object when converting from SingleCellExperiment and check if that exists when converting back the other way.

Originally mentioned in #5