Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as “hidden” states in a Markov process.
In the man page, I would like to have some information on the order of the 'p' vector in ancRECON. Or maybe allow for a matrix of rates (e.g. like provided in corDISC or phytools::fitPagel.
In the man page, I would like to have some information on the order of the 'p' vector in ancRECON. Or maybe allow for a matrix of rates (e.g. like provided in corDISC or phytools::fitPagel.