thelovelab / DESeq2

Differential expression of RNA-seq data using the Negative Binomial
https://bioconductor.org/packages/DESeq2
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Installation error: #81

Closed desmodus1984 closed 1 year ago

desmodus1984 commented 1 year ago

HI, I tried installing DESeq2 using the instruction from Bioconductor, and I got the following error messages at the end:

ERROR: dependency ‘GenomeInfoDb’ is not available for package ‘GenomicRanges’

library(DESeq2) Error in library("DESeq2") : there is no package called ‘DESeq2’

I work in a workstation with Linux Ubuntu 22.04.2 LTS

Thanks;

mikelove commented 1 year ago

Can we switch to Bioconductor support site instead for installation issues? So if you have follow up, post there please.

The above issue can be solved by installing GenomeInfoDb.

I also work on an Ubuntu machine, and I highly recommend Dirk's r2u solution:

https://eddelbuettel.github.io/r2u/