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thelovelab / fishpond

Differential expression and allelic analysis, nonparametric statistics
https://thelovelab.github.io/fishpond
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plotInfReps y axis mislabel #16

Closed qxxxd closed 2 years ago

qxxxd commented 2 years ago

Hello,

First I want to thank you for the great package!

When I was trying to plot the expression of transcripts using plotInfReps, I noticed that the y axis label was 'counts' in stead of 'scaled counts' by default although I've run scaleInfReps already in the first step. I guess this was due to a mistyped "infRepsScaled" in these lines?

https://github.com/mikelove/fishpond/blob/ca8c3f6b77b20991bcbd5de90a186544df3871a6/R/helper.R#L160-L163

mikelove commented 2 years ago

Thanks for the catch! Just pushed this to Bioc and GitHub.

mikelove commented 2 years ago

If you see anything else, or have questions about interpretation of results, feel free to post here or on Bioc support site, whichever you prefer.